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Sphingobacterium hotanense sp. nov., isolated from soil of a Populus euphratica forest, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense.

Identifieur interne : 002481 ( Main/Exploration ); précédent : 002480; suivant : 002482

Sphingobacterium hotanense sp. nov., isolated from soil of a Populus euphratica forest, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense.

Auteurs : Ting Xiao [République populaire de Chine] ; Xiang He [République populaire de Chine] ; Gang Cheng [République populaire de Chine] ; Haiju Kuang [République populaire de Chine] ; Xiangru Ma [République populaire de Chine] ; Khayir Yusup [République populaire de Chine] ; Maryam Hamdun [République populaire de Chine] ; Abaidulla Gulsimay [République populaire de Chine] ; Chengxiang Fang [République populaire de Chine] ; Erkin Rahman [République populaire de Chine]

Source :

RBID : pubmed:22611196

Descripteurs français

English descriptors

Abstract

A novel Gram-staining-negative bacterial strain, designated XH4(T), was isolated from soil of a Populus euphratica forest in the Hotan River valley, Xinjiang Uyghur autonomous region, PR China. The cells were strictly aerobic, non-motile, short rods. The isolate grew optimally at 37 °C and at pH 7.0-8.0. Based on 16S rRNA gene sequence analysis, strain XH4(T) belonged to the genus Sphingobacterium and was closely related to Sphingobacterium mizutaii ATCC 33299(T) (96.1 % sequence similarity). The DNA G+C content was 41.2 mol%. The major polar lipid of strain XH4(T) was phosphatidylethanolamine, and several unidentified polar lipids were also present. Strain XH4(T) showed the typical chemotaxonomic features of the genus Sphingobacterium, with the presence of ceramide phosphorylethanolamine 2 (CerPE-2) as the major ceramide. The major cellular fatty acids of strain XH4(T) were iso-C15 : 0 (34.0 %), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c; 20.7 %) and iso-C17 : 0 3-OH (14.7 %). The predominant isoprenoid quinone was MK-7. On the basis of phenotypic data and phylogenetic inference, strain XH4(T) represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium hotanense sp. nov. is proposed. The type strain is XH4(T) ( = NRRL B-59204(T)  = CCTCC AB 209007(T)). Emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense are also given.

DOI: 10.1099/ijs.0.030155-0
PubMed: 22611196


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Le document en format XML

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<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (analysis)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phosphatidylethanolamines (analysis)</term>
<term>Phylogeny (MeSH)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
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<term>Sphingobacterium (genetics)</term>
<term>Sphingobacterium (isolation & purification)</term>
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<term>ARN ribosomique 16S (génétique)</term>
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<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Phosphatidyléthanolamine (analyse)</term>
<term>Phylogenèse (MeSH)</term>
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<term>Sphingobacterium (classification)</term>
<term>Sphingobacterium (génétique)</term>
<term>Sphingobacterium (isolement et purification)</term>
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<term>Sphingomyéline</term>
<term>Vitamine K2</term>
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<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Sphingobacterium</term>
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<term>Sphingobacterium</term>
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<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
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<term>Sphingobacterium</term>
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<term>Sphingobacterium</term>
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<term>Arbres</term>
<term>Populus</term>
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<term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Données de séquences moléculaires</term>
<term>Microbiologie du sol</term>
<term>Phylogenèse</term>
<term>Techniques de typage bactérien</term>
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<front>
<div type="abstract" xml:lang="en">A novel Gram-staining-negative bacterial strain, designated XH4(T), was isolated from soil of a Populus euphratica forest in the Hotan River valley, Xinjiang Uyghur autonomous region, PR China. The cells were strictly aerobic, non-motile, short rods. The isolate grew optimally at 37 °C and at pH 7.0-8.0. Based on 16S rRNA gene sequence analysis, strain XH4(T) belonged to the genus Sphingobacterium and was closely related to Sphingobacterium mizutaii ATCC 33299(T) (96.1 % sequence similarity). The DNA G+C content was 41.2 mol%. The major polar lipid of strain XH4(T) was phosphatidylethanolamine, and several unidentified polar lipids were also present. Strain XH4(T) showed the typical chemotaxonomic features of the genus Sphingobacterium, with the presence of ceramide phosphorylethanolamine 2 (CerPE-2) as the major ceramide. The major cellular fatty acids of strain XH4(T) were iso-C15 : 0 (34.0 %), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c; 20.7 %) and iso-C17 : 0 3-OH (14.7 %). The predominant isoprenoid quinone was MK-7. On the basis of phenotypic data and phylogenetic inference, strain XH4(T) represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium hotanense sp. nov. is proposed. The type strain is XH4(T) ( = NRRL B-59204(T)  = CCTCC AB 209007(T)). Emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense are also given.</div>
</front>
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<Month>05</Month>
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<Title>International journal of systematic and evolutionary microbiology</Title>
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<ArticleTitle>Sphingobacterium hotanense sp. nov., isolated from soil of a Populus euphratica forest, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense.</ArticleTitle>
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<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.030155-0</ELocationID>
<Abstract>
<AbstractText>A novel Gram-staining-negative bacterial strain, designated XH4(T), was isolated from soil of a Populus euphratica forest in the Hotan River valley, Xinjiang Uyghur autonomous region, PR China. The cells were strictly aerobic, non-motile, short rods. The isolate grew optimally at 37 °C and at pH 7.0-8.0. Based on 16S rRNA gene sequence analysis, strain XH4(T) belonged to the genus Sphingobacterium and was closely related to Sphingobacterium mizutaii ATCC 33299(T) (96.1 % sequence similarity). The DNA G+C content was 41.2 mol%. The major polar lipid of strain XH4(T) was phosphatidylethanolamine, and several unidentified polar lipids were also present. Strain XH4(T) showed the typical chemotaxonomic features of the genus Sphingobacterium, with the presence of ceramide phosphorylethanolamine 2 (CerPE-2) as the major ceramide. The major cellular fatty acids of strain XH4(T) were iso-C15 : 0 (34.0 %), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c; 20.7 %) and iso-C17 : 0 3-OH (14.7 %). The predominant isoprenoid quinone was MK-7. On the basis of phenotypic data and phylogenetic inference, strain XH4(T) represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium hotanense sp. nov. is proposed. The type strain is XH4(T) ( = NRRL B-59204(T)  = CCTCC AB 209007(T)). Emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense are also given.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Xiao</LastName>
<ForeName>Ting</ForeName>
<Initials>T</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>He</LastName>
<ForeName>Xiang</ForeName>
<Initials>X</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Cheng</LastName>
<ForeName>Gang</ForeName>
<Initials>G</Initials>
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<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Kuang</LastName>
<ForeName>Haiju</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Ma</LastName>
<ForeName>Xiangru</ForeName>
<Initials>X</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Yusup</LastName>
<ForeName>Khayir</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Hamdun</LastName>
<ForeName>Maryam</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Gulsimay</LastName>
<ForeName>Abaidulla</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Fang</LastName>
<ForeName>Chengxiang</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Rahman</LastName>
<ForeName>Erkin</ForeName>
<Initials>E</Initials>
<AffiliationInfo>
<Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y">
<DataBank>
<DataBankName>GENBANK</DataBankName>
<AccessionNumberList>
<AccessionNumber>FJ859899</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2012</Year>
<Month>05</Month>
<Day>18</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010714">Phosphatidylethanolamines</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D013109">Sphingomyelins</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>11032-49-8</RegistryNumber>
<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>112130-78-6</RegistryNumber>
<NameOfSubstance UI="C060281">ceramide phosphoethanolamine</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>39382-08-6</RegistryNumber>
<NameOfSubstance UI="C483858">phosphatidylethanolamine</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>8427BML8NY</RegistryNumber>
<NameOfSubstance UI="C062629">vitamin MK 7</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010714" MajorTopicYN="N">Phosphatidylethanolamines</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D045249" MajorTopicYN="N">Sphingobacterium</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D013109" MajorTopicYN="N">Sphingomyelins</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
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<Year>2012</Year>
<Month>5</Month>
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<Hour>6</Hour>
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<Day>28</Day>
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<list>
<country>
<li>République populaire de Chine</li>
</country>
<region>
<li>Hubei</li>
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<settlement>
<li>Wuhan</li>
</settlement>
<orgName>
<li>Université de Wuhan</li>
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<name sortKey="Xiao, Ting" sort="Xiao, Ting" uniqKey="Xiao T" first="Ting" last="Xiao">Ting Xiao</name>
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<name sortKey="Cheng, Gang" sort="Cheng, Gang" uniqKey="Cheng G" first="Gang" last="Cheng">Gang Cheng</name>
<name sortKey="Fang, Chengxiang" sort="Fang, Chengxiang" uniqKey="Fang C" first="Chengxiang" last="Fang">Chengxiang Fang</name>
<name sortKey="Gulsimay, Abaidulla" sort="Gulsimay, Abaidulla" uniqKey="Gulsimay A" first="Abaidulla" last="Gulsimay">Abaidulla Gulsimay</name>
<name sortKey="Hamdun, Maryam" sort="Hamdun, Maryam" uniqKey="Hamdun M" first="Maryam" last="Hamdun">Maryam Hamdun</name>
<name sortKey="He, Xiang" sort="He, Xiang" uniqKey="He X" first="Xiang" last="He">Xiang He</name>
<name sortKey="Kuang, Haiju" sort="Kuang, Haiju" uniqKey="Kuang H" first="Haiju" last="Kuang">Haiju Kuang</name>
<name sortKey="Ma, Xiangru" sort="Ma, Xiangru" uniqKey="Ma X" first="Xiangru" last="Ma">Xiangru Ma</name>
<name sortKey="Rahman, Erkin" sort="Rahman, Erkin" uniqKey="Rahman E" first="Erkin" last="Rahman">Erkin Rahman</name>
<name sortKey="Yusup, Khayir" sort="Yusup, Khayir" uniqKey="Yusup K" first="Khayir" last="Yusup">Khayir Yusup</name>
</country>
</tree>
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